“installation of package ‘affy’ had non-zero exit status”Warning message in install.packages(pkgs = doing, lib = lib, repos = repos. “installation of package ‘Rgraphviz’ had non-zero exit status”Warning message in install.packages(pkgs = doing, lib = lib, repos = repos. “installation of package ‘affyio’ had non-zero exit status”Warning message in install.packages(pkgs = doing, lib = lib, repos = repos. “installation of package ‘preprocessCore’ had non-zero exit status”Warning message in install.packages(pkgs = doing, lib = lib, repos = repos. Warning message in install.packages(pkgs = doing, lib = lib, repos = repos.
Installing package(s) 'BiocVersion', 'rnaseqGene'Īlso installing the dependencies ‘formatR’, ‘numDeriv’, ‘reshape’, ‘ProtGenerics’, ‘DelayedArray’, ‘GenomeInfoDbData’, ‘progress’, ‘lambda.r’, ‘futile.options’, ‘coda’, ‘bbmle’, ‘affyio’, ‘preprocessCore’, ‘graph’, ‘RBGL’, ‘GO.db’, ‘AnnotationForge’, ‘Rgraphviz’, ‘R.oo’, ‘R.methodsS3’, ‘VariantAnnotation’, ‘OrganismDbi’, ‘GGally’, ‘ensembldb’, ‘AnnotationFilter’, ‘ShortRead’, ‘DESeq’, ‘aroma.light’, ‘bookdown’, ‘SummarizedExperiment’, ‘GenomeInfoDb’, ‘GenomicRanges’, ‘Biostrings’, ‘BiocGenerics’, ‘S4Vectors’, ‘IRanges’, ‘XVector’, ‘zlibbioc’, ‘rtracklayer’, ‘biomaRt’, ‘Biobase’, ‘futile.logger’, ‘snow’, ‘locfit’, ‘geneplotter’, ‘emdbook’, ‘RcppEigen’, ‘RcppNumerical’, ‘affy’, ‘limma’, ‘beeswarm’, ‘vipor’, ‘annotate’, ‘hwriter’, ‘Category’, ‘GOstats’, ‘edgeR’, ‘PFAM.db’, ‘GSEABase’, ‘R.utils’, ‘ggbio’, ‘BSgenome’, ‘biovizBase’, ‘matrixStats’, ‘EDASeq’, ‘BiocStyle’, ‘airway’, ‘Rsamtools’, ‘GenomicFeatures’, ‘GenomicAlignments’, ‘BiocParallel’, ‘DESeq2’, ‘apeglm’, ‘vsn’, ‘pheatmap’, ‘PoiClaClu’, ‘ggbeeswarm’, ‘genefilter’, ‘AnnotationDbi’, ‘org.Hs.eg.db’, ‘ReportingTools’, ‘Gviz’, ‘sva’, ‘RUVSeq’, ‘fission’ I receive: Updating HTML index of packages in '.Library'īioconductor version 3.8 (BiocManager 1.30.4), R 3.5.1 ()
#Packrat r on jupyter code#
For example, when I run this installation code from: if (!requireNamespace("BiocManager", quietly = TRUE))īiocManager::install("rnaseqGene", version = "3.8")
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